CCRXP ADV: User selected parameters (Definitions are provided here. For detailed effect on CCR analysis, click here)



Packing density range:
Packing density is defined as the number of residues (positions defined by ca-atom or geometric center, as selected) within a given distance. This distance is called PD Range. Default for CCRXP_lite is 7A.

Distance range for clustering residues:
Clusters are formed using single linkage hierarchical approach, by starting seeds at every residue point. If no linkage is found between two evolving clusters at a distance cutoff, clusters are counted as separate. Default for CCRXP_lite is 5A.